# anno tool module `anno.tl`

```{eval-rst}
.. module:: vampire.anno.tl
```

```{eval-rst}
.. currentmodule:: vampire.anno.tl
```

## Alignment

```{eval-rst}
.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   motif_msa
   sample_msa
```

## Motif Abundance

```{eval-rst}
.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   motif_abundance_pca
```

## Haplotype Calling

```{eval-rst}
.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   haplotype_neighbor
   haplotype_leiden
   haplotype_leiden_res_scan
```