Release notes

Release notes#

Future features#

Status

Feature Description

Priority

Target Version

Planned

Comprehensive metadata of human populational genome resources

P1

v0.4

Planned

Downstream analysis module for scan

P1

v0.5

Discussed

Disease-associated expansion quantification

P3

v0.5-0.6

Discussed

TR catalog generation pipeline

P3

v0.5-0.6

Versions#

[Latest] — v0.4.2 (2026-06-22)#

Bug Fixes#

  • Fixed a bug in src/vampire/_anno.py.

New Features#

  • Added GitHub Actions workflow (.github/workflows/docker.yml) to build and push Docker images to Docker Hub (zikunyang/vampire-tr) on every v* tag push.

  • Added Dockerfile at repository root.

v0.4.1 (2026-06-22)#

Bug Fixes#

  • Added missing runtime dependencies discovered during v0.4.0 usage:

    • parasail>=1.3 (required by vampire.anno.tl.motif_msa)

    • nbformat>=4.2.0 (required by Plotly for Jupyter rendering)

    • ipywidgets>=7.0 (required by tqdm for Jupyter progress bar widgets)

v0.4.0 (2026-06-22)#

New Features#

  • Added API framework (vp.datasets, vp.anno.pp, vp.anno.pl, vp.anno.tl) (Issues #2, #3)

  • Added CLI (scan)

  • Added vp.datasets module: wdr7_hprc(), ancestry()

Improvements#

  • We update anno with length-restrained loop searching method to resolve more complex tandem repeats.

  • We add the parameter --use-raw to anno. This can preserve all different motifs without compression.

Bug Fixes#

  • Fixed Issue #5

[Initial] — v0.3.0 (2025-06-02)#

New Features#

  • Added CLI framework (anno, …)

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