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Installation
Tutorials
Basics
STR/VNTR across populations
Centromere and Satellites
CLI
scan
anno
generator
evaluate
refine
identity
API
VAMPIRE Built-in Datasets
vampire.datasets.ancestry
vampire.datasets.wdr7_hprc
anno preprocessing module
anno.pp
vampire.anno.pp.read_bed
vampire.anno.pp.read_bedgraph
vampire.anno.pp.read_indexed_bed
vampire.anno.pp.read_anno
anno tool module
anno.tl
vampire.anno.tl.motif_msa
vampire.anno.tl.sample_msa
vampire.anno.tl.motif_abundance_pca
vampire.anno.tl.haplotype_neighbor
vampire.anno.tl.haplotype_leiden
vampire.anno.tl.haplotype_leiden_res_scan
anno plotting module
anno.pl
vampire.anno.pl.set_default_plotstyle
vampire.anno.pl.waterfall
vampire.anno.pl.waterfall_legend
vampire.anno.pl.copy_number_violin
vampire.anno.pl.copy_number_stacked_violin
vampire.anno.pl.logo
vampire.anno.pl.motif_msa
vampire.anno.pl.motif_abundance_heatmap
vampire.anno.pl.motif_abundance_pca
vampire.anno.pl.motif_abundance_pca_variance
vampire.anno.pl.haplotype_distance_heatmap
vampire.anno.pl.haplotype_leiden_res_scan
vampire.anno.pl.tracksplot
vampire.anno.pl.logo_from_matrix
vampire.anno.pl.heatmap_from_matrix
Release notes
Contributing
References
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