CLI

CLI#

This section documents the command-line interface (CLI) subcommands provided by VAMPIRE.

scan

Scan sequences for tandem repeat region annotation.

anno

Annotate single tandem repeat locus across population.

generator

Generate synthetic tandem repeat sequences for benchmarking.

evaluate

Evaluate and compare annotation results against real sequences.

refine

Refine motif annotation.

identity

Calculate identify matrix across repeat units.